) DNA G C content material (bp) Number of replicons Extra-chromosomal components Total

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This could possibly be as a consequence of an assembly error, or the frameshift could happen to be introduced at a later point for the duration of propagation.Value five,930,035 56,737 five,146,184 three,472,195 1 0 5,021 4,869 74 13 five four 4 61 four 78 4,200 669 four,013 1,698 four,256 1,641 3,933 511 1,112 of Total 100.00 0.96 86.78 58.55 100.00 96.97 1.47 0.26 0.ten 0.08 0.08 1.21 1.55 83.65 13.32 79.92 33.82 84.76 32.68 78.33 ten.18 22.excluding pseudo-genes; thus E gacA gene of Pseudomonas syringae. Can. J. Microbiol. 42:177?82. 19. Liu, M. percentage values differ from those displayed in the IMG/ER Requirements in Genomic SciencesDudnik et al. Gonz ez AJ, Landeras E, Mendoza MC.) DNA G+C content material (bp) Number of replicons Extra-chromosomal components PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/24756377 Total genes Protein-coding genes RNA genes rRNA genes 5S rRNA 16S rRNA 23S rRNA tRNA genes rRNA operons Pseudo-genes Protein coding genes with function prediction devoid of function predictiona Protein coding genes with COGs with KOGs with Pfam with TIGRfam in paralog clusters Proteins with signal peptides Proteins with transmembrane helicesa asyringofactin, variety VI pili, large surface adhesins, siderophores pyoverdine and achromobactin, proteases and also other secreted hydrolytic enzymes, RND-type transporters (such as putative mexAB, mexCD, mexEF, and mexMN homologs [60,61]), all of that are discovered in other P. syringae strains. It is also notable that inaZ gene encoding icenucleation protein is truncated by a frameshift, thus creating this strain ice-negative. The latter contradicts final results of a preceding study by Hwang and colleagues [16] in which Pss B64 has been identified to be ice-positive. This could be because of an assembly error, or the frameshift could have already been introduced at a later point for the duration of propagation.Value 5,930,035 56,737 five,146,184 3,472,195 1 0 5,021 4,869 74 13 5 four 4 61 4 78 4,200 669 4,013 1,698 four,256 1,641 three,933 511 1,112 of Total one hundred.00 0.96 86.78 58.55 100.00 96.97 1.47 0.26 0.ten 0.08 0.08 1.21 1.55 83.65 13.32 79.92 33.82 84.76 32.68 78.33 ten.18 22.excluding pseudo-genes; hence percentage values differ from those displayed at the IMG/ER Requirements in Genomic SciencesDudnik et al. Table 4. Variety of genes connected using the 25 basic COG functional categories Code Worth age Description J A K L B D Y V T M N Z W U O C G E F H I P Q R S 208 1 352 162 1 42 48 332 275 159 1 140 156 230 265 439 90 177 152 268 122 515 388 1,008 4.60 0.02 7.78 three.58 0.02 0.93 1.06 7.34 6.08 3.52 0.02 3.ten 3.45 five.09 five.86 9.71 1.99 3.91 3.36 five.93 2.70 11.39 8.58 20.08 Translation RNA processing and modification Transcription Replication, recombination and repair Chromatin structure and dynamics Cell cycle control, mitosis and meiosis Nuclear structure Defense mechanisms Signal transduction mechanisms Cell wall/membrane biogenesis Cell motility Cytoskeleton Extracellular structures Intracellular trafficking and secretion Posttranslational modification, protein turnover, chaperones Power production and conversion Carbohydrate transport and metabolism Amino acid transport and metabolism Nucleotide transport and metabolism Coenzyme transport and metabolism Lipid transport and metabolism Inorganic ion transport and metabolism Secondary metabolites biosynthesis, transport and catabolism Basic function prediction only Function unknown Not in COGshttp://standardsingenomics.orgPseudomonas syringae pathovar syringae strain BFigure 2. Graphical map of your chromosome.